Abstract: Chinese quarantine fungi are a type of harmful organisms that pose important threats and disasters to plants. There are currently 130 species included in the list of Chinese quarantine pests. Due to the gradual in-depth study of fungal taxonomy in recent years, the classification system has been updated rapidly and the “International Code of Nomenclature for algae, fungi and plants” has made major adjustments to the part involving fungi. The naming and use of Chinese quarantine fungi have been greatly affected. Based on the latest taxonomic research and nomenclature rules, this article conducts a comprehensive check and revision of the Latin scientific names of Chinese quarantine fungi. This article selects and drafts the Chinese scientific names in accordance with “A glossary of mycology” and “Nomenclature on the Chinese names of fungi and lichens”, then compiles the above results into a directory. This list can promote the standardization and correct the use of the quarantine fungi names, provide support for the in-depth subsequent research on related plant pathology and the formulation of national quarantine policies.